SNP Profiles of ICS 39 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	TT	AC	GG	CT	AC	CC	AG	CT	AT	GG	AA	CC	CC
1._RUQ_1089	_	_	AC	_	_	_	_	AG	_	_	_	_	CC	_
2._ICS_39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
3._GC-01-085-5-02	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
4._GC-01-085-5-02	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
5._GC-01-85-5-02	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
6._GC-01-85-5-02	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
7._GC-01-85-5-02	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
8._GC-01-085-5-02	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
9._ICS_39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
10._ICS_39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
11._ICS_39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
12._ICS_39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
13._ICS_39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
14._ICS_39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
15._GC-01-85-5-02	GG	AT	AC	GT	CT	_	CG	AG	CT	AT	GG	AG	CC	CT
16._ICS_39	GG	AT	AC	GT	CT	_	CG	AG	CT	AT	GG	AG	CC	CT
17._ICS_39	GG	AT	AC	GT	CT	AC	GG	AG	CT	AT	AG	AG	CC	CT
18._RUQ_1089	GG	TT	AC	CC	AG	AC	GG	AG	AG	AT	GG	_	CC	_
19._ICS_39_Fld#_30_Plt#_2	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	GG	AA	CC	AA	GG	CC	CC	CT	GG	AT	TT	AG	CT
1._RUQ_1089	_	GG	AA	_	AA	GG	CC	_	_	_	_	_	AG	_
2._ICS_39	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
3._GC-01-085-5-02	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
4._GC-01-085-5-02	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
5._GC-01-85-5-02	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
6._GC-01-85-5-02	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
7._GC-01-85-5-02	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
8._GC-01-085-5-02	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
9._ICS_39	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
10._ICS_39	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
11._ICS_39	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
12._ICS_39	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
13._ICS_39	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
14._ICS_39	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AA	CT
15._GC-01-85-5-02	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
16._ICS_39	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AA	CT
17._ICS_39	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AA	CT
18._RUQ_1089	AC	GG	AA	GG	_	CC	GG	GG	AG	GG	AT	AA	AG	AG
19._ICS_39_Fld#_30_Plt#_2	AC	CG	AC	AG	_	AA	CG	GG	AA	GG	AA	AG	AA	AG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AA	CC	CC	TT	TT	AC	TT	TT	CC	AG	CC	X_X	X_X
1._RUQ_1089	AG	_	CC	_	TT	_	_	_	_	CC	_	_	X_X	X_X
2._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
3._GC-01-085-5-02	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
4._GC-01-085-5-02	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
5._GC-01-85-5-02	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
6._GC-01-85-5-02	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
7._GC-01-85-5-02	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
8._GC-01-085-5-02	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
9._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
10._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
11._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
12._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
13._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
14._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	GG	AG	CT	X_X	X_X
15._GC-01-85-5-02	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
16._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
17._ICS_39	AA	AA	CT	CT	GT	CC	AA	TT	CT	GG	AG	CT	X_X	X_X
18._RUQ_1089	AG	AA	_	_	AA	AA	_	AA	AA	GG	AA	GG	X_X	X_X
19._ICS_39_Fld#_30_Plt#_2	AA	AA	_	_	AA	GG	AA	AA	AG	CC	AG	AG	X_X	X_X

Input profile: ICS_39 RUQ_1089

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._ICS_39 RUQ_1089

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._ICS_39

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 9

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

3._ICS_39 GC-01-085-5-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

4._ICS_39 GC-01-085-5-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._ICS_39 GC-01-85-5-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15

Notes: PL15 FP4

6._ICS_39 GC-01-85-5-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14

Notes: PL14 FP3

7._ICS_39 GC-01-85-5-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5

Notes: PL5 FP2

8._ICS_39 GC-01-085-5-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

9._ICS_39

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 12

Dapeng Zhang, 2016

10._ICS_39

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 16

Dapeng Zhang, 2016

11._ICS_39

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL14 F

Dapeng Zhang, 2016

12._ICS_39

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL15 F

Dapeng Zhang, 2016

13._ICS_39

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL5 FP

Dapeng Zhang, 2016

14._ICS_39

66.3 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 9 C0200 2A

Dapeng Zhang, 2016

15._ICS_39 GC-01-85-5-02

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8

Notes: PL8 FP1

16._ICS_39

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL8 FP

Dapeng Zhang, 2016

17._ICS_39

63.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E361 T3

Dapeng Zhang, 2016

18._ICS_39 RUQ_1089

45.6 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

19._ICS_39 ICS_39_Fld#_30_Plt#_2

44.3 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 30, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520